gpo.zugaina.org

Search Portage & Overlays:

sci-biology/stacks

Analyze restriction enzyme data, draw gen. maps, population genomics

Screenshots

ChangeLog

commit d93f43a0459c27bc0268cc5cec3ad2f780b0e905
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue Jan 25 12:07:16 2022 +0100

sci-biology/stacks: bump to version 2.60

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit b1f8fb2cb1c558b3875729f47d0d1147f2f54513
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:37:16 2021 +0100

sci-biology/stacks: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit b542f8b8e105b98240945504b7f73ff9abf7a1a3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Feb 4 08:07:20 2021 +0100

sci-biology/stacks: version bump, EAPI bump

does not install yet: access denied
so no keywords for now

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000

Update Manifests to new hashes

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit e775d986b79d735a837a50360915536b2b28a080
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Apr 30 15:36:58 2017 +0200

sci-biology/stacks: rely on SLOT 0 of htslib < 1.4

Supposedly stacks would not work with htslib-1.4 which provides libhtslib.so.2

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit 2272938e78efe357468c8e1b4c3420f6bfe73284
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Apr 30 15:34:47 2017 +0200

sci-biology/stacks:

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 01a5062038a8bc55319bb81222c9f1bcd369cb20
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:27:18 2017 +0000

Shorten all DESCRIPTION to <80 chars

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 8aec8372c9bdfd17983c8d1de3ddad33b7c6945e
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Dec 2 22:31:16 2016 +0100

sci-biology/stacks: add missing dependency

Package-Manager: portage-2.3.2

commit 7ce5ca59fd2297afcb385fc468de7f45b44d4210
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Dec 1 17:36:41 2016 +0100

sci-biology/stacks: version bump; drop bundled htslib sources, bug #601366

Package-Manager: portage-2.3.2

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 5ad65da4ea4fab1b11538dad050e8f7c17313206
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 20:35:58 2015 +0200

sci-biology/stacks: commented out sys-cluster/openmpi DEPENDency

Package-Manager: portage-2.2.18

commit 54a60219b2133d354c713da37c7fbc85d42242c9
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 12:59:22 2015 +0200

sci-biology/stacks: SRC_URI cleanup

Package-Manager: portage-2.2.18

commit 516e1786c44625083bf64955835be31d5b7f9331
Author: Christoph Junghans <ottxor@gentoo.org>
Date: Tue Sep 16 10:26:19 2014 -0600

clean up

Package-Manager: portage-2.2.8-r1

commit 1f2d059a9dabfde3feba094757e22afdb4ee2567
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Mar 28 15:03:36 2014 +0100

sci-biology/stacks: skeleton for a new package; needs webapp team help, *some* Makefile's need proper DESTDIR support

Package-Manager: portage-2.2.7