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sci-biology/deeptools

Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig

Screenshots

  • deeptools-3.5.1
    ~amd64
    doc python_targets_python3_10 python_targets_python3_11

    View      Download      Browse     License: BSD   
    Overlay: science
  • deeptools-3.5.0
    ~amd64
    doc python_targets_python3_10 python_targets_python3_11

    View      Download      Browse     License: BSD   
    Overlay: science

Runtime Dependencies

deeptools-3.5.1



>=sci-biology/deeptools-intervals-0.1.8[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/numpy-1.9.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/numpydoc-0.5[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/scipy-0.17.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


dev-python/plotly[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/py2bit-0.2.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/pyBigWig-0.2.1[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=sci-biology/pysam-0.14.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/matplotlib-3.1.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]

python_targets_python3_10?
      ( dev-lang/python:3.10 )

python_targets_python3_11?
      ( dev-lang/python:3.11 )

deeptools-3.5.0



>=sci-biology/deeptools-intervals-0.1.8[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/numpy-1.9.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/numpydoc-0.5[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/scipy-0.17.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


dev-python/plotly[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/py2bit-0.2.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/pyBigWig-0.2.1[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=sci-biology/pysam-0.14.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]


>=dev-python/matplotlib-3.1.0[python_targets_python3_10
      (-)
?
,python_targets_python3_11
      (-)
?
]

python_targets_python3_10?
      ( dev-lang/python:3.10 )

python_targets_python3_11?
      ( dev-lang/python:3.11 )