gpo.zugaina.org

Search Portage & Overlays:

sci-libs/libmaus2

Library for biobambam2

Screenshots

  • libmaus2-9999
    cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2

    View      Download      Browse     License: BSD-2 GPL-2 GPL-3 MIT ZLIB   
    Overlay: science
  • libmaus2-2.0.689
    ~amd64 ~x86
    cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2

    View      Download      Browse     License: BSD-2 GPL-2 GPL-3 MIT ZLIB   
    Overlay: science

ChangeLog

commit 3dd3af665fd88792a77b7a3b40ed8f2052e1ef4d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:46:16 2021 +0100

sci-libs/libmaus2: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 6b93c27115efc381ba6dc195e2a4d32b98a23177
Author: Horea Christian <chr@chymera.eu>
Date: Mon Sep 28 03:28:26 2020 -0400

sci-libs/libmaus2: dropped old version

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>

commit b886b4e53916c3c3ebf31f07c1fc1f375a128c40
Author: Horea Christian <chr@chymera.eu>
Date: Mon Sep 28 03:17:54 2020 -0400

sci-libs/libmaus2: updated dependencies

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian <chr@chymera.eu>

commit 14d6fe3e3263ff60126348989714159e9731e2a5
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 30 16:37:44 2019 +0100

sci-libs/libmaus2: point to libmaus2 and to gitlab

Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 08a272766f1feb9206762a4c51839c55a9c7637d
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 30 16:20:32 2019 +0100

sci-libs/libmaus2: version bump to 2.0.689

Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 6a52a6c327152d555ec8699271d8d4445a27f285
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 30 16:14:45 2019 +0100

sci-libs/libmaus2: update the ebuild for gitlab.com site

Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit e0215dc900d17e7750c3e5cd97cc0fefc97cf121
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 30 15:50:11 2019 +0100

Revert "sci-libs/libmaus2: fix checksum for libmaus2-2.0.587.tar.gz"

This reverts commit 5b73968232fec269ce58c6e6b70c882dc586c99f.

The tar.gz file contains
libmaus2-master-b47d1821a42cfb4629c6f401483e4e9b285c80c4
(which corresponds to 2:689:0)
instead of
libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901
(which corresponds to 2:587:0)

Upstream moved development from github to gitlab but the releases
should be still distributed through github. Will need to fix the
download URL or ask usptream to fix release tarball creation process.

Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 5b73968232fec269ce58c6e6b70c882dc586c99f
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Dec 30 15:47:24 2019 +0100

sci-libs/libmaus2: fix checksum for libmaus2-2.0.587.tar.gz

Package-Manager: Portage-2.3.75, Repoman-2.3.17
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 458e1564c2fa03fefffd8a8f9dc8975d95f26c3f
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Jan 22 16:17:58 2019 +0100

sci-libs/libmaus2: upstream moved from github to gitlab

https://github.com/gt1/libmaus2/issues/28#issuecomment-456336598

Package-Manager: Portage-2.3.56, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 4fdad4d5229ce714a6a2c7e91338be89c14e7fc4
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Fri Dec 14 12:40:50 2018 +0100

sci-libs/libmaus2: bring in a release, add more LICENSEs

The list of licenses is still incomplete and somebody more
comfortable with interpretation of them inside *.asm and other
files needs to poke over this before unmasking. See AUTHORS
file for their listing.

Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 1e04d5868f177eb639f03889b59d2cba00206578
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 21:01:49 2017 +0000

Second try to clean spaces in metadata.xml

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000

Consistently ident with tabs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 27def088978a406b829e839584cead93eb9a38c8
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Apr 29 21:25:37 2017 +0200

sci-libs/libmaus2: Improve einfo based on upstream issue #19

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit 51fe11a3b2a3519a325f9cb86f1b27ea0cf9ec62
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Apr 18 14:09:06 2017 +0200

sci-libs/libmaus2: make configure to enable optional but highly wanted features

The configure by default has a number of features disables, and does not enable
the option. It somehow does not even try to look for headers and libs from say
snappy unless --enable-snappy was passed.

Try to blindly enable most of the features although it is not clear whether say
gnutls should be preferred over nettle, likewise when --enable-sse4 is any better
--enable-sse3 (and should not be enabled concurrently with it).

Package-Manager: Portage-2.3.5, Repoman-2.3.2

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit e842de446a9e5dfa46b57f023e3e7fe878bdf168
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 15 11:06:33 2016 +0200

sc-libs/libmaus2: minor polishing

Package-Manager: portage-2.2.28

commit ec639407519c52105c86906c2909ecbeb3a25665
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 14 20:42:06 2016 +0200

sci-libs/libmaus2: new package although a version bump of sci-libs/libmaus

I think this and the parental libmaus package will need a fix on the LICENSE
line (they are not only GPL-v3).

Package-Manager: portage-2.2.28