# Copyright 2019-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit autotools git-r3

DESCRIPTION="Library for biobambam2"
HOMEPAGE="https://github.com/gt1/libmaus"
EGIT_REPO_URI="https://gitlab.com/german.tischler/libmaus2"

LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS
SLOT="0"
KEYWORDS=""
IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2"

DEPEND="
	app-arch/snappy
	sci-libs/fftw
	sci-libs/hdf5
	net-libs/gnutls
	dev-libs/nettle"
# --with-daligner
# --with-irods

src_prepare() {
	eautoreconf
	eapply_user
}

src_configure(){
	local CONFIG_OPTS
	use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 )
	( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 )
	econf --with-snappy $CONFIG_OPTS \
		--with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw
	# --with-io_lib
	# will require >=sci-libs/io_lib-1.14.11 which is not yet available in ::gentoo
}

pkg_postinst(){
	einfo "The snappy dependency is not strictly needed"
	einfo "but were forced for optimal libmaus2 performance."
	einfo "igzip is only used if gzip level is set to 11."
}