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dev-python/fslpy

The FSL Python Library

dev-python/grabbit

Get grabby with file trees

dev-python/hdf5storage

Read/write Python types to/from HDF5 files, including MATLAB v7.3 MAT files

dev-python/meshpy

Quality triangular and tetrahedral mesh generation for Python

dev-python/num2words

Modules to convert numbers to words.

dev-python/pyBigWig

quick access to and creation of bigWig files

dev-python/py2bit

Python library for accessing 2bit files

dev-python/pynrrd

Simple pure-python module for reading and writing nrrd files

dev-python/python-gantt

Draw Gantt charts from Python

dev-python/pysolar

Collection of Python libraries for simulating the irradiation by the sun

dev-python/trimesh

Python library for loading and using triangular meshes

dev-python/xopen

Open compressed files transparently

dev-util/makefile2graph

Create a graph of dependencies from GNU Make

net-misc/cernbox-client

Synchronize files from CERNBox EOS with your computer

sci-biology/GAL

Genome Annotation Library (incl. fasta_tool)

sci-biology/afni

Advanced Normalitazion Tools for neuroimaging

sci-biology/bambus

Scaffolding Polymorphic Genomes and Metagenomes, a part of AMOS bundle

sci-biology/trinityrnaseq

Transcriptome assembler for RNA-seq reads

sci-biology/jtreeview-bin

Viewer for Microarray Data in PCL or CDT formats

sci-biology/exonerate-gff3

exonerate-2.2.0 with patches to add GFF3 formatted output

sci-biology/tigmint

Correct misassemblies using linked reads from 10x Genomics Chromium

sci-biology/Fastaq

Manipulate FASTA/Q, GFF3, EMBL, GBK files with API for developers

sci-biology/bx-python

Library for rapid implementation of genome scale analyses

sci-biology/deeptools

Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig

sci-biology/dcmstack

DICOM to Nifti coversion

sci-biology/dipy

Computational neuroanatomy project focusing on diffusion MRI

sci-biology/gffutils

GFF and GTF file manipulation and interconversion

sci-biology/nilearn

Fast and easy statistical learning on NeuroImaging data

sci-biology/nitime

Time-series analysis of neuroscience data

sci-biology/samri

Small Animal Magnetic Resonance Imaging

sci-biology/ants

Advanced Normalitazion Tools for neuroimaging

sci-biology/stacks

Analyze restriction enzyme data, draw gen. maps, population genomics

sci-chemistry/nmrpipe

Spectral visualisation, analysis and Fourier processing

sci-libs/spglib

Spglib is a C library for finding and handling crystal symmetries

sci-libs/nipype

Neuroimaging in Python: Pipelines and Interfaces

sci-libs/pybids

Python package to access BIDS datasets

sci-libs/spyking-circus

Fast spike sorting by template matching

sci-libs/arrayfire

general purpose GPU library

sci-libs/clfft

Library containing FFT functions written in OpenCL

sci-libs/clrng

A library for uniform random number generation in OpenCL

sci-libs/nipy

Neuroimaging tools for Python

sci-libs/rdkit

Cheminformatics and machine-learning software written in C++ and Python

sci-physics/openmx

Material eXplorer

sci-visualization/fsleyes-widgets

GUI widgets and utilities for the FSLeyes viewer

sci-visualization/fsleyes-props

Object attribute management for the FSLeyes viewer

sys-cluster/modules

Dynamic modification of a user's environment via modulefiles

app-arch/libdeflate

Heavily optimized DEFLATE/zlib/gzip (de)compression

dev-python/pyopnsense

A python API client for OPNsense

gui-apps/wayvnc

VNC server for wlroots based Wayland compositors

dev-haskell/ghc-lib-parser-ex

Algorithms on GHC parse trees