sci-biology/ugene
A free open-source cross-platform bioinformatics software
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commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 98ba084c90a88f4365be1740746df0585fb50823
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Tue Nov 30 15:00:53 2021 +0100
sci-biology/ugene: version bump
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 47d4c85e08c818fd119d259506160f1050a74257
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 20 17:58:51 2021 +0100
sci-biology/ugene: add back CONFIG_OPTS from old ebuild
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit d2c2ce3d5cfc77e7fb2dcd3ad1724c0ab67e3ab8
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 20 17:52:05 2021 +0100
sci-biology/ugene: inherit xdg
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 67f8c1f4d5b5e40fd3c78925085f3fd5c6f2d5bd
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 20:50:46 2021 +0100
sci-biology/ugene: fix filename
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 5bcac17fd32533404f6d89b513e7669c19888b82
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 16:58:39 2021 +0100
sci-biology/ugene: fix my stupid mistake
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 365484e3d565d0312d3fe87d6f3d8073bde50575
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 15:31:27 2021 +0100
sci-biology/ugene: cmake --> qmake
cmake does not have install target
the qmake build system does
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 0caa148ee0ebb4e150a8013a0c6c28f83b146d5f
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 13:50:29 2021 +0100
sci-biology/ugene: remove Werror flags
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit ae07cd127720d6469a7ef97fa6881184af5ce2dc
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 13:31:59 2021 +0100
sci-biology/ugene: bring back version 37.0
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit e898ef7da638b5cc6106933428310626419640a3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 13:10:55 2021 +0100
Revert "sci-biology/ugene: remove from tree."
This reverts commit 1b3fdb740a49af440e5f0956f9c64b00be9b7ace.
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 1b3fdb740a49af440e5f0956f9c64b00be9b7ace
Author: Benda Xu <heroxbd@gentoo.org>
Date: Mon Feb 3 11:39:43 2020 +0800
sci-biology/ugene: remove from tree.
SRC_URI is dead. Upstream is alive, but it is not trivial to figure
out the source tarball download of the new version.
Feel free to add this package back to tree.
Bug: https://bugs.gentoo.org/707558
Signed-off-by: Benda Xu <heroxbd@gentoo.org>
commit 955116fde829ade97ea11c5a48db3433f4f5e3bb
Author: Benda Xu <heroxbd@gentoo.org>
Date: Mon Sep 10 09:30:49 2018 +0800
sci-biology/ugene: drop old versions.
Bug: https://bugs.gentoo.org/663110
Package-Manager: Portage-2.3.48, Repoman-2.3.10
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e0bb430dd8c078ea0aa22268eba26a47febe7b31
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:55:14 2017 +0000
Drop all trailing whitespaces
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 3efd1a49d9fc70a792e91a369e005484af7ccd24
Author: Soren Harward <stharward@gmail.com>
Date: Mon Jan 25 14:33:10 2016 -0500
ugene-1.20.0 needs qtscript[scripttools]
workflow_designer plugin needs QtScriptTools, so make this flag
mandatory. Tested with qtscript-5.5.1.
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2c053fa093d79ef628eaf5d6fc885a9f1c20c0cf
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Tue Jan 5 19:49:26 2016 +0300
sci-biology/ugene: Fix install target
Package-Manager: portage-2.2.26
commit 02584effffa3b8da25fc366b27611c87699af537
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Tue Jan 5 17:47:40 2016 +0300
sci-biology/ugene: Make it actualy compile
Package-Manager: portage-2.2.26
commit d64b45637881bf496c6eaaf38a1047ac006958e6
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Jan 4 15:41:40 2016 +0100
sci-biology/ugene: version bump, maybe the >=Qt5-5.2.1 should be specified more properly?
Package-Manager: portage-2.2.26
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 8dcd8558167579657ff0a26126f343af2572d069
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat May 9 23:41:34 2015 +0200
sci-biology/ugene: version bump
Package-Manager: portage-2.2.18
commit 8930ee5bdd97ef5d99b6cbb99037c7b9a1ea5a39
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Sun Feb 1 19:13:23 2015 +0100
sci-biology/ugene: Convert sse2 to cpu_flags_x86_sse2
commit 439dc67ce3b2feb49ccc6d44ba4993782bdb6066
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Sun Jun 1 23:05:14 2014 +0400
Add new ebuild
Package-Manager: portage-2.2.10
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 98ba084c90a88f4365be1740746df0585fb50823
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Tue Nov 30 15:00:53 2021 +0100
sci-biology/ugene: version bump
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>
commit 47d4c85e08c818fd119d259506160f1050a74257
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 20 17:58:51 2021 +0100
sci-biology/ugene: add back CONFIG_OPTS from old ebuild
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit d2c2ce3d5cfc77e7fb2dcd3ad1724c0ab67e3ab8
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Mar 20 17:52:05 2021 +0100
sci-biology/ugene: inherit xdg
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 67f8c1f4d5b5e40fd3c78925085f3fd5c6f2d5bd
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 20:50:46 2021 +0100
sci-biology/ugene: fix filename
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 5bcac17fd32533404f6d89b513e7669c19888b82
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 16:58:39 2021 +0100
sci-biology/ugene: fix my stupid mistake
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 365484e3d565d0312d3fe87d6f3d8073bde50575
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 15:31:27 2021 +0100
sci-biology/ugene: cmake --> qmake
cmake does not have install target
the qmake build system does
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 0caa148ee0ebb4e150a8013a0c6c28f83b146d5f
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 13:50:29 2021 +0100
sci-biology/ugene: remove Werror flags
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit ae07cd127720d6469a7ef97fa6881184af5ce2dc
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 13:31:59 2021 +0100
sci-biology/ugene: bring back version 37.0
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit e898ef7da638b5cc6106933428310626419640a3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 13:10:55 2021 +0100
Revert "sci-biology/ugene: remove from tree."
This reverts commit 1b3fdb740a49af440e5f0956f9c64b00be9b7ace.
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 1b3fdb740a49af440e5f0956f9c64b00be9b7ace
Author: Benda Xu <heroxbd@gentoo.org>
Date: Mon Feb 3 11:39:43 2020 +0800
sci-biology/ugene: remove from tree.
SRC_URI is dead. Upstream is alive, but it is not trivial to figure
out the source tarball download of the new version.
Feel free to add this package back to tree.
Bug: https://bugs.gentoo.org/707558
Signed-off-by: Benda Xu <heroxbd@gentoo.org>
commit 955116fde829ade97ea11c5a48db3433f4f5e3bb
Author: Benda Xu <heroxbd@gentoo.org>
Date: Mon Sep 10 09:30:49 2018 +0800
sci-biology/ugene: drop old versions.
Bug: https://bugs.gentoo.org/663110
Package-Manager: Portage-2.3.48, Repoman-2.3.10
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e0bb430dd8c078ea0aa22268eba26a47febe7b31
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:55:14 2017 +0000
Drop all trailing whitespaces
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 3efd1a49d9fc70a792e91a369e005484af7ccd24
Author: Soren Harward <stharward@gmail.com>
Date: Mon Jan 25 14:33:10 2016 -0500
ugene-1.20.0 needs qtscript[scripttools]
workflow_designer plugin needs QtScriptTools, so make this flag
mandatory. Tested with qtscript-5.5.1.
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2c053fa093d79ef628eaf5d6fc885a9f1c20c0cf
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Tue Jan 5 19:49:26 2016 +0300
sci-biology/ugene: Fix install target
Package-Manager: portage-2.2.26
commit 02584effffa3b8da25fc366b27611c87699af537
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Tue Jan 5 17:47:40 2016 +0300
sci-biology/ugene: Make it actualy compile
Package-Manager: portage-2.2.26
commit d64b45637881bf496c6eaaf38a1047ac006958e6
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Jan 4 15:41:40 2016 +0100
sci-biology/ugene: version bump, maybe the >=Qt5-5.2.1 should be specified more properly?
Package-Manager: portage-2.2.26
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 8dcd8558167579657ff0a26126f343af2572d069
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat May 9 23:41:34 2015 +0200
sci-biology/ugene: version bump
Package-Manager: portage-2.2.18
commit 8930ee5bdd97ef5d99b6cbb99037c7b9a1ea5a39
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Sun Feb 1 19:13:23 2015 +0100
sci-biology/ugene: Convert sse2 to cpu_flags_x86_sse2
commit 439dc67ce3b2feb49ccc6d44ba4993782bdb6066
Author: Alexey Shvetsov <alexxy@gentoo.org>
Date: Sun Jun 1 23:05:14 2014 +0400
Add new ebuild
Package-Manager: portage-2.2.10