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sci-biology/pysam

Python interface for the SAM/BAM sequence alignment and mapping format

Screenshots

  • pysam-9999
    test python_targets_python3_9 python_targets_python3_10 python_targets_python3_11

    View      Download      Browse     License: MIT   
    Overlay: gentoo
  • pysam-0.22.1
    ~amd64 ~x86
    test python_targets_python3_10 python_targets_python3_11 python_targets_python3_12

    View      Download      Browse     License: MIT   
    Overlay: gentoo

ChangeLog

commit b1ad15e7a10105fb9f0905ea5aac0835a62b46f3
Author: Martin Mokrejs <mmokrejs@gmail.com>
Date: Fri Jan 10 17:32:20 2020 +0100

sci-biology/pysamstats: version bump
sci-biology/pysam: version bump

I am not sure if the path pysam-0.12-fix-buildsystem.patch is still
needed or not. Nevertheless, the modules do not import properly into
python so the ebuild needs more work.

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Martin Mokrejs <mmokrejs@gmail.com>

commit 02fbd9cb160ec37e7a85eb4349717237e120aeeb
Author: David Seifert <soap@gentoo.org>
Date: Sat Sep 2 14:45:42 2017 +0200

sci-biology/pysam: Remove old

commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100

Cleanup remote IDs

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000

Drop leftover from CVS in HEADER

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit d656b6d1ca11a70c8c47fb326e16bd3564006518
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 17:05:17 2017 +0000

Drop quoting form EAPI

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b3b06688c38bc3f28d68be75e5e30ff1adcb1386
Author: David Seifert <soap@gentoo.org>
Date: Sun Apr 10 00:14:19 2016 +0200

sci-biology/pysam: Remove old, latest 0.9.0 in main tree

Package-Manager: portage-2.2.28

commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100

metadata.xml: Set type

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100

metadata.xml: convert hard -> proj

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 26e6def0b3eb2ebcf04bf0d1a43f84db0a5b1240
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:49:16 2016 +0100

matadata.xml: Pre Cleanup

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100

Drop ChangeLogs in favour of commit messages

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 94d90ab3b484a298828765dcccac7416741911d2
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Thu Dec 3 22:59:00 2015 +0100

sci-biology/pysam: version bump to 0.8.4

Package-Manager: portage-2.2.26

commit 1037f2c1ee00dc5b87dd7979f1fbe093885236eb
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Oct 16 15:38:31 2015 +0200

Update remote-ids

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 0c71d353954ad0e01c6e1595f4e493ad7857f6dc
Author: Ted Tanberry <ted.tanberry@gmail.com>
Date: Sat Oct 10 17:12:58 2015 +0200

sci-biology/pysam: version bump to 0.8.3

This also includes a fix for building with
Cython 0.23.

commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200

Convert all $Header$ to $Id$ tags as it has be done in gentoo.git

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200

Revert "Gentoo does https by default now"

This reverts commit 98718494343af4990facdefb0033471686e975a6.

commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200

Gentoo does https by default now

Signed-off-by: Justin Lecher <jlec@gentoo.org>

commit 873670a86527262a39f625944c64be11265f7052
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Mon May 4 10:17:56 2015 +0200

Drop keywords; Fix deps

Package-Manager: portage-2.2.18

commit 3ea57834601daea6b91432738e088d0a18428d7b
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat May 2 18:28:41 2015 +0200

added PYTHON_USEDEP

commit 26603b1f757f06f0c7e234390eecd3f5ea6ddfbd
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Apr 30 22:14:31 2015 +0200

sci-biology/pysam: version bump; noted samtools dependencies as mentioned in download page accessible from https://code.google.com/p/pysam/downloads/list ; also added PYTHON_COMPAT for python3

Package-Manager: portage-2.2.18