sci-biology/imagej
Image Processing and Analysis in Java
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commit b9e1397d441af5d9ea9e076f61719eadbabff069
Author: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Date: Thu Nov 7 15:24:35 2024 +0100
sci-*/*: remove dead java-ant-2 eclass
See: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f28ab51fad9acb876a8fef5dd56f656afcd2776c
Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
commit 6f4847c6f5bc771f45f8d4dc3106679ce4c760d1
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jun 16 11:25:24 2024 -0700
sci-biology/imagej: ant-core deprecated
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
This commit removes dev-java/ant-core from dependencies
This has been deprecated, and it gets automatically used with ant2
Latest updates had depclean dev-java/ant-core, and the packages still builds after dependency removal
see:
https://packages.gentoo.org/packages/dev-java/ant-core
Closes: https://github.com/gentoo/sci/pull/1275
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit f9718d14356d6ac995991a9e02331b40d97204d8
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jun 9 11:59:06 2024 -0700
sci-biology/imagej: add 1.54i, drop 1.54h
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
* This PR bumps imagej to version 1.54i
* This PR, also, redirects the icon to the new URL. Old URL hosted on the nih
became disabled
Closes: https://github.com/gentoo/sci/pull/1272
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit c5701b9a123d9cf9ebdf13570b3b92cabae54fc2
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Wed Dec 20 10:46:29 2023 +0100
sci-biology/imagej: revbump 1.54h
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 9d05db0ba02b6bf5638da71761558eaa5b7face4
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Tue Dec 19 11:32:27 2023 -0800
sci-biology/imagej: drop 1.54g
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1227
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit be482279cf5432b33ae455e27c427919392a8764
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Tue Dec 19 08:02:53 2023 -0800
sci-biology/imagej: bump version imagej sources and plugins
* ImageJ version bump 1.53t to 1.54g from NIH sources
* plugins version bump 153 to 154
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 4e29aee84176d30527862de23b0fe7c5c049c70c
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Mon Dec 18 15:21:17 2023 -0800
sci-biology/imagej: add 1.54h, drop 1.54f
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1224
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 2d9c80a90fcc0affb4f85daba6fcfef4b2831b64
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Thu Aug 17 12:20:50 2023 -0700
sci-biology/imagej: add 1.54f, drop 1.54d
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1213
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit f6ee8374ed488f3621b2193345c0039cd73d06e9
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sat Jul 8 11:23:30 2023 -0700
sci-biology/imagej: Add unstable git versions
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Co-authored-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Closes: https://github.com/gentoo/sci/pull/1198
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 5cf6be39e39840cc88e4dfa86ed372ff85736e95
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jul 2 14:43:21 2023 -0700
sci-biology/imagej: bump to 1.53t
Closes: https://github.com/gentoo/sci/pull/1197
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 2bb3e74a499bc39723588d1affa29204bf82a78f
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 26 16:00:08 2021 +0100
sci-biology/imagej: version bump, EAPI bump, add keywords
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 595d87fc830c18593784b5634cff7139d17028e3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 17:21:31 2021 +0100
sci-biology/imagej: depend on app-arch/unzip
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit db6c1666f10c9df6f91a38a45fcba0da7424cdfd
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:28:36 2017 +0200
sci-biology/imagej: Do not call external programs in global scope
Closes: https://bugs.gentoo.org/show_bug.cgi?id=630214
Package-Manager: Portage-2.3.8, Repoman-2.3.3
commit ce9dbd43bb73dc4b69fdc4ccf1cfd38e5485b029
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:51:20 2017 +0100
sci-biology/imagej: adjust einfo message accordingly
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 7124d48942d4162762b188a131a5f1f186e1f460
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:49:15 2017 +0100
sci-biology/imagej: change default IJ_HOME value to $HOME/.imagej
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 11a62943a13d8d1837f530fa234480991589a501
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:35:06 2017 +0100
sci-biology/imagej: there is no separate /proc/meminfo in EPREFIXed hosts
Add link to github issue. Remove CVS header line.
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 395c7e7490baf0d7a6e6550fd47d966c285dc171
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 15 22:38:28 2017 +0100
sci-biology/imagej: new package
Ebuild taken over from https://bugs.gentoo.org/show_bug.cgi?id=112275
src_compile screams about:
>>> Compiling source in /scratch/var/tmp/portage/sci-biology/imagej-1.51k/work/source ...
!!! ERROR: Package jython was not found!
but it builds fine using Apache ant.
ImageJ2 is using maven as a build system ( https://imagej.net/ImageJ2 )
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Author: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Date: Thu Nov 7 15:24:35 2024 +0100
sci-*/*: remove dead java-ant-2 eclass
See: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f28ab51fad9acb876a8fef5dd56f656afcd2776c
Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
commit 6f4847c6f5bc771f45f8d4dc3106679ce4c760d1
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jun 16 11:25:24 2024 -0700
sci-biology/imagej: ant-core deprecated
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
This commit removes dev-java/ant-core from dependencies
This has been deprecated, and it gets automatically used with ant2
Latest updates had depclean dev-java/ant-core, and the packages still builds after dependency removal
see:
https://packages.gentoo.org/packages/dev-java/ant-core
Closes: https://github.com/gentoo/sci/pull/1275
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit f9718d14356d6ac995991a9e02331b40d97204d8
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jun 9 11:59:06 2024 -0700
sci-biology/imagej: add 1.54i, drop 1.54h
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
* This PR bumps imagej to version 1.54i
* This PR, also, redirects the icon to the new URL. Old URL hosted on the nih
became disabled
Closes: https://github.com/gentoo/sci/pull/1272
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit c5701b9a123d9cf9ebdf13570b3b92cabae54fc2
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Wed Dec 20 10:46:29 2023 +0100
sci-biology/imagej: revbump 1.54h
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 9d05db0ba02b6bf5638da71761558eaa5b7face4
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Tue Dec 19 11:32:27 2023 -0800
sci-biology/imagej: drop 1.54g
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1227
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit be482279cf5432b33ae455e27c427919392a8764
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Tue Dec 19 08:02:53 2023 -0800
sci-biology/imagej: bump version imagej sources and plugins
* ImageJ version bump 1.53t to 1.54g from NIH sources
* plugins version bump 153 to 154
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 4e29aee84176d30527862de23b0fe7c5c049c70c
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Mon Dec 18 15:21:17 2023 -0800
sci-biology/imagej: add 1.54h, drop 1.54f
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1224
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 2d9c80a90fcc0affb4f85daba6fcfef4b2831b64
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Thu Aug 17 12:20:50 2023 -0700
sci-biology/imagej: add 1.54f, drop 1.54d
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Closes: https://github.com/gentoo/sci/pull/1213
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit f6ee8374ed488f3621b2193345c0039cd73d06e9
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sat Jul 8 11:23:30 2023 -0700
sci-biology/imagej: Add unstable git versions
Signed-off-by: IAHMCOL <IAHMCOL@thejabberwocky.net>
Co-authored-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Closes: https://github.com/gentoo/sci/pull/1198
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 5cf6be39e39840cc88e4dfa86ed372ff85736e95
Author: Israel Hernandez <israel.a.hernandez@gmail.com>
Date: Sun Jul 2 14:43:21 2023 -0700
sci-biology/imagej: bump to 1.53t
Closes: https://github.com/gentoo/sci/pull/1197
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 2bb3e74a499bc39723588d1affa29204bf82a78f
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 26 16:00:08 2021 +0100
sci-biology/imagej: version bump, EAPI bump, add keywords
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 595d87fc830c18593784b5634cff7139d17028e3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 17:21:31 2021 +0100
sci-biology/imagej: depend on app-arch/unzip
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit db6c1666f10c9df6f91a38a45fcba0da7424cdfd
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:28:36 2017 +0200
sci-biology/imagej: Do not call external programs in global scope
Closes: https://bugs.gentoo.org/show_bug.cgi?id=630214
Package-Manager: Portage-2.3.8, Repoman-2.3.3
commit ce9dbd43bb73dc4b69fdc4ccf1cfd38e5485b029
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:51:20 2017 +0100
sci-biology/imagej: adjust einfo message accordingly
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 7124d48942d4162762b188a131a5f1f186e1f460
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:49:15 2017 +0100
sci-biology/imagej: change default IJ_HOME value to $HOME/.imagej
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 11a62943a13d8d1837f530fa234480991589a501
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 16 11:35:06 2017 +0100
sci-biology/imagej: there is no separate /proc/meminfo in EPREFIXed hosts
Add link to github issue. Remove CVS header line.
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 395c7e7490baf0d7a6e6550fd47d966c285dc171
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 15 22:38:28 2017 +0100
sci-biology/imagej: new package
Ebuild taken over from https://bugs.gentoo.org/show_bug.cgi?id=112275
src_compile screams about:
>>> Compiling source in /scratch/var/tmp/portage/sci-biology/imagej-1.51k/work/source ...
!!! ERROR: Package jython was not found!
but it builds fine using Apache ant.
ImageJ2 is using maven as a build system ( https://imagej.net/ImageJ2 )
Package-Manager: Portage-2.3.3, Repoman-2.3.1