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sci-biology/gffread

GFF/GTF utility providing format conversions, filter/extract regions from FASTA

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ChangeLog

commit 4b61ed2003869365d59797ff40e5e38b18d7a18d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Wed Mar 2 15:25:58 2022 +0100

sci-biology/gffread: bump to 0.12.7

Closes: https://bugs.gentoo.org/832451
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit 473163338f8960441248568d4b7e091aa5a313fe
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:26:26 2021 +0100

sci-biology/gffread: drop UnusedInherits

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

commit e55065dc88a894edab65609ffdd4e275cdcd4bd0
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Mon Mar 25 12:49:49 2019 +0100

sci-biology/gffread: bump to 0.11.0, drop old patch, use sed hackery

Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>

commit 75c0f38ac94bb4c86f2c10ef5c0b99227d80cfa9
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Jun 26 09:59:41 2018 +0200

sci-biology/gffread: fetch gclib and use during compilation

The soucre tree is not made to use site-wide installed headers from
gclib. I am not going to figure out git commit tag of gclib automagically
bundled into some gffread binary when gffread was released (to make
a dedicated gclib-$commitnr.tar.gz file for Gentoo/Debian/etc. and to
include it into SRC_URI here so gffread could use it.

It is the task for upstream author to properly document required versions
of dependencies and release them properly.

https://github.com/gpertea/gffread/issues/26#issuecomment-400134376

Package-Manager: Portage-2.3.40, Repoman-2.3.9

commit ea003571ac74c209954bfe016cb6a91319058080
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Tue Jun 26 00:23:40 2018 +0200

sci-biology/gffread: new package

Does not compile, will report upstream.

Package-Manager: Portage-2.3.40, Repoman-2.3.9