sci-biology/fastqc
Quality control FASTA/FASTQ sequence files
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commit b9e1397d441af5d9ea9e076f61719eadbabff069
Author: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Date: Thu Nov 7 15:24:35 2024 +0100
sci-*/*: remove dead java-ant-2 eclass
See: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f28ab51fad9acb876a8fef5dd56f656afcd2776c
Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 98735b6ba74c5ea944506782d1781e5ea790963d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 15:35:03 2022 +0100
sci-biology/fastqc: drop useless blank line
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 583a4958059ee8ac661ecc8919618250f3a7188b
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 12:49:42 2022 +0100
sci-biology/fastqc: version bump to 0.11.9
add desktop shortcuts and stuff
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 9db96fc507deb101b1d2618ba425da3b612ccb35
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:24:40 2021 +0100
sci-biology/fastqc: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 727e16a722a057469a4ea348ef4a896c978cd961
Author: Anton Molyboha <anton.stay.connected@gmail.com>
Date: Fri Nov 13 16:07:53 2020 -0800
sci-biology/fastqc: correctly install the package.
Based on local testing, the program now works for .fastq files, but does
not work for .fast5 files. This is also not the latest version. However,
this is a step forward from "not working at all". The issues will need
to be solved in the future.
Signed-off-by: Anton Molyboha <anton.stay.connected@gmail.com>
Closes: https://github.com/gentoo/sci/pull/834
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e0bb430dd8c078ea0aa22268eba26a47febe7b31
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:55:14 2017 +0000
Drop all trailing whitespaces
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 01a5062038a8bc55319bb81222c9f1bcd369cb20
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:27:18 2017 +0000
Shorten all DESCRIPTION to <80 chars
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit ce7e04bde51f3c7a2a711812dfeb991400f8baa0
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jun 10 15:33:49 2015 +0200
more comments on the external dependencies
Package-Manager: portage-2.2.18
commit f88203259ef0c27caa76cf104f4bf851f6e012d0
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jun 10 15:27:42 2015 +0200
add dependency on jhdf5; more ebuild cleanup
Package-Manager: portage-2.2.18
commit 59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat May 30 19:50:55 2015 +0200
sci-biology/fastqc: version bump, added perl dependency, Apache ant-building does not work still
Package-Manager: portage-2.2.18
commit 748a9abdd6948868e36aa058ab158d4c4506fdd2
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 5 21:09:21 2015 +0100
added build.xml exported by author from Eclipse IDE (it doesn't work under ant eclasses in my hands)
Package-Manager: portage-2.2.15
commit 5fd2d15989cb1eb99579c0679c16772620be122f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 24 23:37:13 2015 +0100
version bump; still missing src_compile() logic
Package-Manager: portage-2.2.15
commit fccbe4ab6a6127316bae390bb0c9d6096e6fd2d5
Author: Christoph Junghans <ottxor@gentoo.org>
Date: Tue Sep 16 10:20:18 2014 -0600
clean up
Package-Manager: portage-2.2.8-r1
commit 65c4d36d3d13f260278569bed39a4a7a467f3468
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Mar 23 19:19:37 2014 +0100
sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming from
Package-Manager: portage-2.2.7
commit 0a17f05714124c90b425b51925dea9557a003422
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Mar 23 18:05:44 2014 +0100
sci-biology/fastqc: a skeleton for a new perl wrapper calling java libs, need help
Package-Manager: portage-2.2.7
Author: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
Date: Thu Nov 7 15:24:35 2024 +0100
sci-*/*: remove dead java-ant-2 eclass
See: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=f28ab51fad9acb876a8fef5dd56f656afcd2776c
Signed-off-by: Alexander Puck Neuwirth <alexander@neuwirth-informatik.de>
commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 98735b6ba74c5ea944506782d1781e5ea790963d
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 15:35:03 2022 +0100
sci-biology/fastqc: drop useless blank line
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 583a4958059ee8ac661ecc8919618250f3a7188b
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Sat Jan 15 12:49:42 2022 +0100
sci-biology/fastqc: version bump to 0.11.9
add desktop shortcuts and stuff
Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 9db96fc507deb101b1d2618ba425da3b612ccb35
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:24:40 2021 +0100
sci-biology/fastqc: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 727e16a722a057469a4ea348ef4a896c978cd961
Author: Anton Molyboha <anton.stay.connected@gmail.com>
Date: Fri Nov 13 16:07:53 2020 -0800
sci-biology/fastqc: correctly install the package.
Based on local testing, the program now works for .fastq files, but does
not work for .fast5 files. This is also not the latest version. However,
this is a step forward from "not working at all". The issues will need
to be solved in the future.
Signed-off-by: Anton Molyboha <anton.stay.connected@gmail.com>
Closes: https://github.com/gentoo/sci/pull/834
Signed-off-by: Aisha Tammy <gentoo@aisha.cc>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e0bb430dd8c078ea0aa22268eba26a47febe7b31
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:55:14 2017 +0000
Drop all trailing whitespaces
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 01a5062038a8bc55319bb81222c9f1bcd369cb20
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:27:18 2017 +0000
Shorten all DESCRIPTION to <80 chars
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit ce7e04bde51f3c7a2a711812dfeb991400f8baa0
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jun 10 15:33:49 2015 +0200
more comments on the external dependencies
Package-Manager: portage-2.2.18
commit f88203259ef0c27caa76cf104f4bf851f6e012d0
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Jun 10 15:27:42 2015 +0200
add dependency on jhdf5; more ebuild cleanup
Package-Manager: portage-2.2.18
commit 59cbe00f7e3f09edbe45448df2f75cbcf2d0e0c0
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat May 30 19:50:55 2015 +0200
sci-biology/fastqc: version bump, added perl dependency, Apache ant-building does not work still
Package-Manager: portage-2.2.18
commit 748a9abdd6948868e36aa058ab158d4c4506fdd2
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Mar 5 21:09:21 2015 +0100
added build.xml exported by author from Eclipse IDE (it doesn't work under ant eclasses in my hands)
Package-Manager: portage-2.2.15
commit 5fd2d15989cb1eb99579c0679c16772620be122f
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Tue Feb 24 23:37:13 2015 +0100
version bump; still missing src_compile() logic
Package-Manager: portage-2.2.15
commit fccbe4ab6a6127316bae390bb0c9d6096e6fd2d5
Author: Christoph Junghans <ottxor@gentoo.org>
Date: Tue Sep 16 10:20:18 2014 -0600
clean up
Package-Manager: portage-2.2.8-r1
commit 65c4d36d3d13f260278569bed39a4a7a467f3468
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Mar 23 19:19:37 2014 +0100
sci-biology/fastqc: reverse-engineered where sam-1.32.jar is likely coming from
Package-Manager: portage-2.2.7
commit 0a17f05714124c90b425b51925dea9557a003422
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Mar 23 18:05:44 2014 +0100
sci-biology/fastqc: a skeleton for a new perl wrapper calling java libs, need help
Package-Manager: portage-2.2.7