sci-biology/codonw
Multivariate statistical analysis of codon and amino acid usage
ChangeLog
commit f1220d233b7ea8c04a84cb5efb241d074407f2c2
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 7 21:29:39 2024 +0200
*/*: drop sourceforge mirror
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 307e9fc6df28cae1f1bb5e53219ae537256c16a9
Author: Horea Christian <chr@chymera.eu>
Date: Sat Feb 18 23:44:56 2023 -0500
sci-biology/codonw: update SRC_URI
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 31dcd0c56eccb45cd15109287b93a00eb24368ec
Author: Horea Christian <chr@chymera.eu>
Date: Sat Feb 18 23:44:04 2023 -0500
sci-biology/codonw: fixed HOMEPAGE HTTPS redirect
Signed-off-by: Horea Christian <chr@chymera.eu>
commit a445fcecd4358c0cee3f88fd59aca14f0af0b68a
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sun Jan 24 15:08:50 2021 +0100
sci-biology/codonw: EAPI bump
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100
Cleanup remote IDs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit d1b1268845627553e3b15302a1d35e4bee8333ea
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Mar 6 20:54:08 2016 +0000
Fix invalid metadata.xml syntax
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a08742af9a713a34c87c6e97a33d129036099a8a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Nov 15 19:52:39 2015 +0100
sci-biology/codonw: add original Thesis of John Peden describing codonw package in more detail
Package-Manager: portage-2.2.18
commit 4579e6dea2fbb4217688b42228b366281a746e22
Author: Justin Lecher <jlec@gentoo.org>
Date: Tue Sep 22 12:06:35 2015 +0200
Add missing hashes to Manifest
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 1272f7f2fd87b7825370d88c03ae8c23c63034c6
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jun 8 10:29:54 2015 +0200
sci-biology/codonw: Updating remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit b227f985711f1cfb5fac1f68edcb816b5ae150d6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat May 30 07:52:06 2015 +0200
sci-biology/codonw: Workaround file collision by appending PN to every command, bug #344713, bug #550388
Package-Manager: portage-2.2.20
commit e95477b2468656bfdb318892b538e7e29e733d4a
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Sat Jan 10 17:00:59 2015 +0100
sci-biology/codonw: Drop unnecessary dies
commit 2b3e8f43608da0a1585a5bf5a37cb21a09b9e1e8
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Sat Jan 10 16:40:35 2015 +0100
sci-biology/codonw: Move to EAPI=5
commit 1b9a1a664fe4a1e2515c3eedc842f0231dc0fcec
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 30 09:10:53 2014 +0100
Sanitize ebuild header
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 7a71d68f2f6ee9e5f715c8521ab73072fb8c91aa
Author: Sébastien Fabbro <bicatali@gentoo.org>
Date: Thu Jun 13 11:36:58 2013 -0700
manifests fixes
commit ac7b80809d0be79d8e0d08354fd707b8566036a2
Author: Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
Date: Sat Jan 14 15:20:31 2012 +0100
Convert to thin manifests (as suggested by alexxy and jlec)
commit e7c0c8fb5f351bcd20bc06f0c193dbda04f7115b
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Jun 24 14:50:05 2011 +0200
Sort inherit and/or USE
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
commit 9045e2bb9ba886b5f50e304c68068da68d9b450d
Author: Kacper Kowalik (Xarthisius) <xarthisius@gentoo.org>
Date: Mon Nov 8 20:19:03 2010 +0100
[sci-biology/codonw] Respect CC,CFLAGS,LDFLAGS. Add missing die. Drop empty deps.
commit fb6458b68421cb8c6579e20a1119e4f682b7da9c
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Sat Feb 28 08:11:22 2009 -0500
keyword amd64
commit 8d1485b5559d0eceaa067d044ba128c88c3fd4a3
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Sat Feb 28 08:08:26 2009 -0500
New package sci-biology/codonw
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Tue May 7 21:29:39 2024 +0200
*/*: drop sourceforge mirror
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 307e9fc6df28cae1f1bb5e53219ae537256c16a9
Author: Horea Christian <chr@chymera.eu>
Date: Sat Feb 18 23:44:56 2023 -0500
sci-biology/codonw: update SRC_URI
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 31dcd0c56eccb45cd15109287b93a00eb24368ec
Author: Horea Christian <chr@chymera.eu>
Date: Sat Feb 18 23:44:04 2023 -0500
sci-biology/codonw: fixed HOMEPAGE HTTPS redirect
Signed-off-by: Horea Christian <chr@chymera.eu>
commit a445fcecd4358c0cee3f88fd59aca14f0af0b68a
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sun Jan 24 15:08:50 2021 +0100
sci-biology/codonw: EAPI bump
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100
Cleanup remote IDs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit d1b1268845627553e3b15302a1d35e4bee8333ea
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Mar 6 20:54:08 2016 +0000
Fix invalid metadata.xml syntax
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a08742af9a713a34c87c6e97a33d129036099a8a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sun Nov 15 19:52:39 2015 +0100
sci-biology/codonw: add original Thesis of John Peden describing codonw package in more detail
Package-Manager: portage-2.2.18
commit 4579e6dea2fbb4217688b42228b366281a746e22
Author: Justin Lecher <jlec@gentoo.org>
Date: Tue Sep 22 12:06:35 2015 +0200
Add missing hashes to Manifest
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 1272f7f2fd87b7825370d88c03ae8c23c63034c6
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jun 8 10:29:54 2015 +0200
sci-biology/codonw: Updating remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit b227f985711f1cfb5fac1f68edcb816b5ae150d6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat May 30 07:52:06 2015 +0200
sci-biology/codonw: Workaround file collision by appending PN to every command, bug #344713, bug #550388
Package-Manager: portage-2.2.20
commit e95477b2468656bfdb318892b538e7e29e733d4a
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Sat Jan 10 17:00:59 2015 +0100
sci-biology/codonw: Drop unnecessary dies
commit 2b3e8f43608da0a1585a5bf5a37cb21a09b9e1e8
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Sat Jan 10 16:40:35 2015 +0100
sci-biology/codonw: Move to EAPI=5
commit 1b9a1a664fe4a1e2515c3eedc842f0231dc0fcec
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 30 09:10:53 2014 +0100
Sanitize ebuild header
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 7a71d68f2f6ee9e5f715c8521ab73072fb8c91aa
Author: Sébastien Fabbro <bicatali@gentoo.org>
Date: Thu Jun 13 11:36:58 2013 -0700
manifests fixes
commit ac7b80809d0be79d8e0d08354fd707b8566036a2
Author: Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
Date: Sat Jan 14 15:20:31 2012 +0100
Convert to thin manifests (as suggested by alexxy and jlec)
commit e7c0c8fb5f351bcd20bc06f0c193dbda04f7115b
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Jun 24 14:50:05 2011 +0200
Sort inherit and/or USE
(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)
commit 9045e2bb9ba886b5f50e304c68068da68d9b450d
Author: Kacper Kowalik (Xarthisius) <xarthisius@gentoo.org>
Date: Mon Nov 8 20:19:03 2010 +0100
[sci-biology/codonw] Respect CC,CFLAGS,LDFLAGS. Add missing die. Drop empty deps.
commit fb6458b68421cb8c6579e20a1119e4f682b7da9c
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Sat Feb 28 08:11:22 2009 -0500
keyword amd64
commit 8d1485b5559d0eceaa067d044ba128c88c3fd4a3
Author: Andrey Kislyuk <kislyuk@devel.(none)>
Date: Sat Feb 28 08:08:26 2009 -0500
New package sci-biology/codonw