sci-biology/cnrun
A NeuroML-enabled, precise but slow neuronal network simulator
ChangeLog
commit 31fc5abffc4b6ff8b33cc1312707ff78d68c1148
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Feb 13 10:35:17 2021 +0100
sci-biology/cnrun: use lua-single instead
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 90443541fea7df61872fe5938dcb01895bb30b88
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Feb 13 10:29:28 2021 +0100
sci-biology/cnrun: correctly depend on lua
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 67be788453c662084d5950cdb2d10b1293e5cda9
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 15:35:36 2021 +0100
sci-biology/cnrun: fix fetch, EAPI bump
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 358f70fb4833d2fac7e5c340c66564c06c5dbe48
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Sat Nov 21 19:06:37 2020 +0200
sci-libs/cnrun: fix source url
Closes: https://bugs.gentoo.org/755293
Signed-off-by: Andrei Zavada <johnhommer@gmail.com>
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 1e04d5868f177eb639f03889b59d2cba00206578
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 21:01:49 2017 +0000
Second try to clean spaces in metadata.xml
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit d656b6d1ca11a70c8c47fb326e16bd3564006518
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 17:05:17 2017 +0000
Drop quoting form EAPI
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 76dadfe56cfad3483ead945d3a9ad46f38dfd89c
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Thu Jan 5 17:15:35 2017 +0200
Version bumps for sci-biology/{aghermann,cnrun} (#717)
* sci-biology/aghermann: Version bump, update deps & SRC_URI
Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/cnrun: Version bump, update SRC_URI
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a9ab3db77039d8a6ca3b0d49db844d33cfa21205
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Sun Jan 17 02:50:39 2016 +0200
sci-biology/cnrun: bump version, remove old (which was buggy)
also shorten description to make it repoman clean
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 925e2d3a5d1026e202d6a1779cd945280e0012b4
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Wed Feb 18 23:24:10 2015 +0200
sci-biology/cnrun: initial ebuild, repoman clean
Package-Manager: portage-2.2.17
commit 793710fde6c3d193a249b5ab6a943a1c596b6abe
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Wed Feb 18 03:10:53 2015 +0200
initial ebuild for sci-biology/cnrun
CNrun is a neuronal network simulator, with these features:
* a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and
Alpha-Beta synapses;
* a 6-5 Runge-Kutta integration method: slow but precise, adjustable;
* Poisson, Van der Pol, Colpitts oscillators and interface for
external stimulation sources;
* NeuroML network topology import/export;
* logging state variables, spikes;
* implemented as a Lua module, for scripting model behaviour (e.g.,
to enable plastic processes regulated by model state);
* interaction (topology push/pull, async connections) with other
cnrun models running elsewhere on a network, with interactions
(planned).
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Feb 13 10:35:17 2021 +0100
sci-biology/cnrun: use lua-single instead
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 90443541fea7df61872fe5938dcb01895bb30b88
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Sat Feb 13 10:29:28 2021 +0100
sci-biology/cnrun: correctly depend on lua
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 67be788453c662084d5950cdb2d10b1293e5cda9
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 15:35:36 2021 +0100
sci-biology/cnrun: fix fetch, EAPI bump
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 358f70fb4833d2fac7e5c340c66564c06c5dbe48
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Sat Nov 21 19:06:37 2020 +0200
sci-libs/cnrun: fix source url
Closes: https://bugs.gentoo.org/755293
Signed-off-by: Andrei Zavada <johnhommer@gmail.com>
Signed-off-by: Horea Christian <chr@chymera.eu>
commit 1e04d5868f177eb639f03889b59d2cba00206578
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 21:01:49 2017 +0000
Second try to clean spaces in metadata.xml
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit d656b6d1ca11a70c8c47fb326e16bd3564006518
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 17:05:17 2017 +0000
Drop quoting form EAPI
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 76dadfe56cfad3483ead945d3a9ad46f38dfd89c
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Thu Jan 5 17:15:35 2017 +0200
Version bumps for sci-biology/{aghermann,cnrun} (#717)
* sci-biology/aghermann: Version bump, update deps & SRC_URI
Package-Manager: Portage-2.3.3, Repoman-2.3.1
* sci-biology/cnrun: Version bump, update SRC_URI
Package-Manager: Portage-2.3.3, Repoman-2.3.1
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a9ab3db77039d8a6ca3b0d49db844d33cfa21205
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Sun Jan 17 02:50:39 2016 +0200
sci-biology/cnrun: bump version, remove old (which was buggy)
also shorten description to make it repoman clean
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 925e2d3a5d1026e202d6a1779cd945280e0012b4
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Wed Feb 18 23:24:10 2015 +0200
sci-biology/cnrun: initial ebuild, repoman clean
Package-Manager: portage-2.2.17
commit 793710fde6c3d193a249b5ab6a943a1c596b6abe
Author: Andrei Zavada <johnhommer@gmail.com>
Date: Wed Feb 18 03:10:53 2015 +0200
initial ebuild for sci-biology/cnrun
CNrun is a neuronal network simulator, with these features:
* a conductance- and rate-based Hodgkin-Huxley neurons, a Rall and
Alpha-Beta synapses;
* a 6-5 Runge-Kutta integration method: slow but precise, adjustable;
* Poisson, Van der Pol, Colpitts oscillators and interface for
external stimulation sources;
* NeuroML network topology import/export;
* logging state variables, spikes;
* implemented as a Lua module, for scripting model behaviour (e.g.,
to enable plastic processes regulated by model state);
* interaction (topology push/pull, async connections) with other
cnrun models running elsewhere on a network, with interactions
(planned).