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sci-biology/bedtools

Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats

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ChangeLog

commit 5fd09132b758233e1f9c24704e832f96df19683b
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Wed Mar 1 00:13:24 2017 -0700

merged from funtoo-staging

merged:

funtoo-staging: d605f51aadda4424f4d767132f6c9c99218c6f66

commit 8383dc854cb998b89a64b9d5682da0249ab337a3
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sun Nov 27 08:09:42 2016 -0700

merged from funtoo-staging

merged:

funtoo-staging: 02a07c12b6841edc8d8b9344a24015936be744cc

commit cd689e4440c2129a26efca243f295f95adec3437
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sat Sep 24 22:40:32 2016 -0600

merged from funtoo-staging

merged:

funtoo-staging: 93f2023725cd9debbbfb0ac3357ecc6937282ec0

commit 3549ddbcd43f6a95226fc79bcbed34a71973b900
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Wed Jan 27 01:12:39 2016 -0700

merged from funtoo-staging

merged:

funtoo-staging: 3c6d53b50924e85ee45686ebd1cde275bd1895fc

commit 9781119c870823ba98f1a381de005521ed9f5be7
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Fri Sep 25 22:54:31 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: 246277491a275205f9617b80e0f9a169b07b02eb

commit 7321bc40c7284075db09dd05d6fd07de91cd8b9f
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Fri Sep 4 13:46:56 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: baa3dd9c6756ee8d0c190ea0507fe3223ca23dca

commit 598ded5ea89821a0d724c8993405c45042b3d82e
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Tue Aug 25 00:26:24 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: 4322619cb1872cc9dbe0fa1fdcd184a3642bac32

commit b7e5a745777286a27e617783130193c0984c486f
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Aug 24 16:26:27 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: fb0f358633061956944a4d2ffba437669323e177

commit 0099bee1c097c4e9ad62cbba61b9ef6c5abc8471
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Aug 24 12:27:16 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: ccd94e33817483691f8e043d7189fe44803aa808

commit 89cc3c4a2ec900bafe261c635084614d240105ec
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Tue Aug 11 04:10:59 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: 90795ffd7b6d717be93874c2cfb775f3c3bb5169

commit c1d11dd856fcae8c424ead2d5ce3185f30653dec
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Jun 15 20:25:08 2015 +0000

merged from funtoo-staging

merged:

funtoo-staging: 8713cf9b5791d882d25257e9642bbb92202ce9f7

commit ce9490ef69a4292d72c2fc65baba66ce0a264e25
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Jun 2 23:46:09 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 7d6232f1655d6d869b79a735e320b50a435729bb
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 0232f7ffdeb09490d47494438b5edfa8e6675122

commit 8f7a00cf59c11b6b40f3be2cfab80d54eadf9cfa
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Jun 2 19:44:32 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 7d6232f1655d6d869b79a735e320b50a435729bb
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 0232f7ffdeb09490d47494438b5edfa8e6675122

commit e30fb6cd8400bc415c2fa2098080e18147ef2a05
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sun Jun 1 23:43:29 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 698bf5142e8a64cf4f6cb8f822240f4061d03384

commit bbefd0027f23d1edb7f35115b63676d10586089e
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sun Jun 1 15:43:11 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 698bf5142e8a64cf4f6cb8f822240f4061d03384

commit b982b4392b1e34d5d4fd414db1f0ff527a774ead
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sun Jun 1 07:44:27 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 698bf5142e8a64cf4f6cb8f822240f4061d03384

commit 79d50ac1d8a4482da3a1dc7b9753fa1b5cddec03
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sun Jun 1 03:44:18 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 698bf5142e8a64cf4f6cb8f822240f4061d03384

commit 0434bde9e7d11a07ae154ddd2fb6cc75f8a458b5
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sat May 31 19:43:43 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: 698bf5142e8a64cf4f6cb8f822240f4061d03384

commit 3be0d0614ea9c1ec3c1b32292d2a534b8ac6b8b2
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sat May 31 03:43:21 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: abf1a133ee460af556ddb48ed254af8207b3b49e

commit d843dc058bac097834afe6e10cb76fa7cb07c19f
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Fri May 30 23:43:19 2014 +0000

glorious funtoo updates

merged:

funtoo-overlay: 6804f897c7e30ce1ac041f3aa0bd726a90f86b05
funtoo-mysql: c0f5ef9fbd1b65d4a4aaf3ed36c0b311dd616da9
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 1ad50aaef1e93863ab64d2b36a4a28686d55bb17
bliss-overlay: 72e67239fb933f3e8110e577cba281b6db82d6db
mate: 4e25125dac2c5effc9777628dce399b755f1dcd3
squeezebox: b5ec7b6ad4746e08df65008376f49b91b62c143d
funtoo-gnome: 38c55b8d56acde2d83124d426994814f32371bf4
sabayon-for-gentoo: abf1a133ee460af556ddb48ed254af8207b3b49e

commit a48b645a8576f4eab5acaccc3285d5addf28cf60
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Mar 24 13:04:33 2014 -0600

glorious funtoo updates

merged:

funtoo-overlay: fe5f9d80e9b6f9e5631eeca492ffb606b88f1d89
foo-overlay: 5e0dc0b0c8ce428c14693a2f3cc709a6f657afd7
bar-overlay: 09dbf39ca3130b8fa3d3c049518b56edd8dffcbe
bliss-overlay: fa4829de3aaaf654077ab1c58107a88a0ddb870b
mate: e495c536bd512f1912a49912483057e90aedac28
squeezebox: b247efdc0dcf9c07ad466f71043a80b9dbf057f0
funtoo-gnome: 034dd3b2ace8693971ea086a045064c0e8db9218
sabayon-for-gentoo: dcae007521110ded32cad98c6a81bc8930d1a804

commit a71637769bc480d6797622d3af9781876cd4343c
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Mar 18 00:50:43 2013 -0600

glorious funtoo updates

merged:

funtoo-overlay: c983d06f29405935b76c197e80d990ca69afa628
foo-overlay: f7dfe75b6d07da7d211e64f6fc213b9c68f6bd49
bar-overlay: 0093f8c8d47e0fff61b04424d49241600c99e539
flora: dbd185f49bc8af154f38e18958ceb41d6cf27078
for-gentoo: 94f75b16ecfb363c5629fad19a06de20aca10873

commit 8d1e9dcc4a2640d76945eeeb4239e18c0988f139
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Mon Mar 11 13:40:24 2013 -0600

glorious funtoo updates

merged:

funtoo-overlay: b0221d59abf45bea4209f87e2f54769db579b736
foo-overlay: f7dfe75b6d07da7d211e64f6fc213b9c68f6bd49
bar-overlay: f1e9085ee695ff5b6ce57d430d6b224aaf4fa0a6
flora: e9070ed3cccc2b75d43f972cde120c1d02e4558c
for-gentoo: a043151109035cd80f145b94dcd76f2fb7601f61

commit c62d0be2a03a50aedb4eb41c5283885c4548ba9e
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Tue May 29 00:31:38 2012 -0600

glorious funtoo updates

merged:

gentoo: e401fdaeb12df025c60198d754e6b9192a019b0d
funtoo-overlay: 1f2e9beb550d8312917e2470ae3ec1b6c745bf56
foo-overlay: 87762a0d356c001f230d7157184eceaf161aa86a
bar-overlay: fb087c5a693ccc4195a2b824a60290a724802b2c
flora: aee0130a54d7313558a5a814f57e6bbe18ce6510

commit d3d9e73c2504fcf02ea6170316f69eb4bcbffa0a
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sat Mar 31 12:23:04 2012 -0600

glorious funtoo updates

merged:

gentoo: e4b64ac56901349963ccf159a4733544d9ea2c96
funtoo-overlay: c02c5da2ae4547d169f39c6ffbc56a807a6c0b47
foo-overlay: d368729389295f4191384547a258b784443e12c1
bar-overlay: 490840edb883a31b75107639b102e97c6969179b
flora: 0aa4b0a668dbe3c966b990117cc5db0648071a69

commit a3e88ee48a7adee91998b076f79f8afec8739dd1
Author: Daniel Robbins <drobbins@funtoo.org>
Date: Sun Jan 22 23:38:09 2012 -0700

glorious funtoo updates

merged:

gentoo: 13843f35165af6e99b1fe74c738636eac84ca68b
funtoo-overlay: 5b4c778a48328a48d6b4dbd89716701ae9e16609
foo-overlay: 1f6221fc09bef4647caf44c57a3cf48a65ce58bb
bar-overlay: 4b6579bdb26d820bd55e85488c8e5eb80d8e8011
flora: 4f9e07e1032406abfa7d4b8d6aa025cc69c934ef