sci-biology/TransDecoder
Extract ORF/CDS regions from FASTA sequences
ChangeLog
commit 9913de808ddbcad652811f5ee3cc62703a361565
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:19:38 2021 +0100
sci-biology/TransDecoder: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 60791ac1314964a122e24e480fbba07c64939ef1
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 17:12:28 2021 +0100
sci-biology/TransDecoder: remove unnecessary slash strip
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 205a84fd4e41b0c09494d8edad2bff30f9610ba3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Mon Jan 18 14:30:41 2021 +0100
sci-biology/TransDecoder: version bump 5.5.0, fix fetching
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 539fae1fd1daad0dc762aaa66fcb6fcec4d46bdc
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:49:10 2017 +0200
sci-biology/TransDecoder: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3
commit 6f631fd58c22a7c42ece339ec8d5ead6d53f55fe
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:47:27 2017 +0200
sci-biology/TransDecoder: Fix double-prefix
Closes: https://bugs.gentoo.org/show_bug.cgi?id=587702
Package-Manager: Portage-2.3.8, Repoman-2.3.3
commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100
Cleanup remote IDs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e0bb430dd8c078ea0aa22268eba26a47febe7b31
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:55:14 2017 +0000
Drop all trailing whitespaces
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 918d50a836b2cd7639dfaea61628b94c87a5c186
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Jul 11 11:10:57 2016 +0200
sci-biology/TransDecoder: respect EPREFIX, add missing die
Package-Manager: portage-2.2.28
commit 1a200d0a079c95ff7357a3581d1f43be63af802d
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 30 16:47:35 2016 +0200
sci-biology/TransDecoder: version bump
Package-Manager: portage-2.2.28
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 26e6def0b3eb2ebcf04bf0d1a43f84db0a5b1240
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:49:16 2016 +0100
matadata.xml: Pre Cleanup
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f08c7474c8fed99cd2614babe0ea5462f31752ae
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Fri Dec 25 21:47:28 2015 +0100
sci-biology/TransDecoder: Fix minorsyn, add missing die
Package-Manager: portage-2.2.24
commit 8bb47dd4462917d5054c9e4e43b063e1f0db5c95
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 19 21:55:08 2015 +0100
sci-biology/TransDecoder: note that Pfam-AB was discontinued
Package-Manager: portage-2.2.18
commit 49c3b13f199c94e36b9d9d03642a22aa81191628
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 19 21:34:35 2015 +0100
sci-biology/TransDecoder: update homepage
Package-Manager: portage-2.2.18
commit 8f7a916bbdbb62d44a963c77692e3895d6b838ba
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 19 21:28:40 2015 +0100
sci-biology/TransDecoder: install properly perl modules; fix PERL5INC paths by adding TransDecoder::, ebuild cleanup
Package-Manager: portage-2.2.18
commit 5a9dcced5751603c1e56bbdf30dcdd39edeb8a53
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Sep 30 16:21:21 2015 +0200
Add missing remote-ids to metadata
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit c5e6229967c5663d3c2b514cbe17409806e8a577
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Jun 6 12:13:00 2015 +0200
sci-biology/TransDecoder: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit cb4121a23d10b5a0879682b261c0e55e483bc218
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri May 1 00:46:00 2015 +0200
sci-biology/TransDecoder: renamed package to keep original letter-casing
Package-Manager: portage-2.2.18
Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Date: Thu Dec 16 11:19:38 2021 +0100
sci-biology/TransDecoder: drop UnusedInherits
Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit 60791ac1314964a122e24e480fbba07c64939ef1
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Tue Jan 19 17:12:28 2021 +0100
sci-biology/TransDecoder: remove unnecessary slash strip
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 205a84fd4e41b0c09494d8edad2bff30f9610ba3
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Mon Jan 18 14:30:41 2021 +0100
sci-biology/TransDecoder: version bump 5.5.0, fix fetching
Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 3072d10e6c4f21185d53e4728d0fa0fad58537e7
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Dec 10 22:20:38 2017 +0000
Update Manifests to new hashes
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 539fae1fd1daad0dc762aaa66fcb6fcec4d46bdc
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:49:10 2017 +0200
sci-biology/TransDecoder: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3
commit 6f631fd58c22a7c42ece339ec8d5ead6d53f55fe
Author: David Seifert <soap@gentoo.org>
Date: Thu Sep 7 22:47:27 2017 +0200
sci-biology/TransDecoder: Fix double-prefix
Closes: https://bugs.gentoo.org/show_bug.cgi?id=587702
Package-Manager: Portage-2.3.8, Repoman-2.3.3
commit 3199ec7737e923dc19479e5de7b31bb583071931
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Apr 30 11:12:48 2017 +0100
Cleanup remote IDs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit e0bb430dd8c078ea0aa22268eba26a47febe7b31
Author: Justin Lecher <jlec@gentoo.org>
Date: Fri Feb 3 16:55:14 2017 +0000
Drop all trailing whitespaces
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 918d50a836b2cd7639dfaea61628b94c87a5c186
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Jul 11 11:10:57 2016 +0200
sci-biology/TransDecoder: respect EPREFIX, add missing die
Package-Manager: portage-2.2.28
commit 1a200d0a079c95ff7357a3581d1f43be63af802d
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Wed Mar 30 16:47:35 2016 +0200
sci-biology/TransDecoder: version bump
Package-Manager: portage-2.2.28
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 26e6def0b3eb2ebcf04bf0d1a43f84db0a5b1240
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:49:16 2016 +0100
matadata.xml: Pre Cleanup
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f08c7474c8fed99cd2614babe0ea5462f31752ae
Author: Marius Brehler <marbre@linux.sungazer.de>
Date: Fri Dec 25 21:47:28 2015 +0100
sci-biology/TransDecoder: Fix minorsyn, add missing die
Package-Manager: portage-2.2.24
commit 8bb47dd4462917d5054c9e4e43b063e1f0db5c95
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 19 21:55:08 2015 +0100
sci-biology/TransDecoder: note that Pfam-AB was discontinued
Package-Manager: portage-2.2.18
commit 49c3b13f199c94e36b9d9d03642a22aa81191628
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 19 21:34:35 2015 +0100
sci-biology/TransDecoder: update homepage
Package-Manager: portage-2.2.18
commit 8f7a916bbdbb62d44a963c77692e3895d6b838ba
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Thu Nov 19 21:28:40 2015 +0100
sci-biology/TransDecoder: install properly perl modules; fix PERL5INC paths by adding TransDecoder::, ebuild cleanup
Package-Manager: portage-2.2.18
commit 5a9dcced5751603c1e56bbdf30dcdd39edeb8a53
Author: Justin Lecher <jlec@gentoo.org>
Date: Wed Sep 30 16:21:21 2015 +0200
Add missing remote-ids to metadata
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit c5e6229967c5663d3c2b514cbe17409806e8a577
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Jun 6 12:13:00 2015 +0200
sci-biology/TransDecoder: Add github to remote-id in metadata.xml
Package-Manager: portage-2.2.20
commit cb4121a23d10b5a0879682b261c0e55e483bc218
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri May 1 00:46:00 2015 +0200
sci-biology/TransDecoder: renamed package to keep original letter-casing
Package-Manager: portage-2.2.18