sci-biology/BRAKER
Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS
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commit b20587d17391fd67cf942830328eb1befffed609
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit acc57b34ce2bf932901a478ccd70a25e25da7dde
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 19:37:24 2021 +0100
sci-biology/BRAKER: use perl_domodule
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 0329e0493d40516a501aea07d2d9c95f8c8c2dd3
Author: Horea Christian <chr@chymera.eu>
Date: Fri Dec 25 13:35:04 2020 -0500
sci-biology/BRAKER: EAPI bump 7
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr@chymera.eu>
commit c7a40f0c2955843da5c85d0abbeed58351547ce1
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 18 19:12:10 2019 +0200
sci-biology/BRAKER: version bump
New HOMEPAGE, SRC_URI, layout of .tar.gz tarball
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3724acdd4d192ac400d81a94f91e957c0e832ccd
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 31 02:15:01 2018 +0200
sci-biology/BRAKER: version bump, update LICENSE
Package-Manager: Portage-2.3.24, Repoman-2.3.6
commit e506aabb717f6536e683c88a998e7b566aab8164
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Jan 8 15:11:10 2018 +0100
sci-biology/BRAKER: version bump
Package-Manager: Portage-2.3.19, Repoman-2.3.6
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit c976d64e8e6458c02d70ec3aeb8a883e86c26e37
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Dec 3 19:51:08 2016 +0100
sci-biology/BRAKER: version bump, point to additional dependency
Package-Manager: portage-2.3.2
commit a87311f012ae7f20a57d4302b78456e15fa2b600
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 12:46:11 2016 +0200
sci-biology/BRAKER: fix PERL5INC
Package-Manager: portage-2.2.28
commit 51cbdef2f5cdf735664fb3869a98c63e31d96078
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 12:40:17 2016 +0200
sci-biology/BRAKER: fix DEPENDency on dev-perl/Scalar-Util-Numeric
Package-Manager: portage-2.2.28
commit c619dfb295649b810b3534ebb55ff5c69ed74482
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 12:28:17 2016 +0200
sci-biology/BRAKER: fix S
Package-Manager: portage-2.2.28
commit 0c868df8f4ba2220ce6b98584c94e23870f0e308
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Feb 27 21:45:25 2016 +0100
sci-biology/BRAKER: add einfo referring to GeneMark-ET requirement
Package-Manager: portage-2.2.26
commit 44918a4a9d9844c8d805694864e978e2c5306eec
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Feb 27 21:38:11 2016 +0100
sci-biology/BRAKER: version bump; update to a new LICENSE; update HOMEPAGE and SRC_URI
Package-Manager: portage-2.2.26
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 03b89a8b4872d92052038aab0a9f64d7bc13c65a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 20:30:06 2015 +0200
sci-biology/BRAKER: added a note about perl-core/Scalar-List-Utils blocking virtual/perl-Scalar-List-Utils (huh?)
Package-Manager: portage-2.2.18
commit aa013962dcd3a5c45b467c96cda43c4bd8e33fad
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 13:38:58 2015 +0200
sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't locate Scalar/Util/Numeric.pm in @INC (you may need to install the Scalar::Util::Numeric module)
Package-Manager: portage-2.2.18
Author: Jérôme Carretero <cJ@zougloub.eu>
Date: Sat Nov 12 05:12:23 2022 -0500
add github remote-id when possible
Semi-automatically done with:
https://gitlab.com/cJ/gentoo-bug-881037-github-reproducible-downloads
Closes: https://github.com/gentoo/sci/pull/1182
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
commit acc57b34ce2bf932901a478ccd70a25e25da7dde
Author: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Date: Thu Mar 18 19:37:24 2021 +0100
sci-biology/BRAKER: use perl_domodule
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
commit 0329e0493d40516a501aea07d2d9c95f8c8c2dd3
Author: Horea Christian <chr@chymera.eu>
Date: Fri Dec 25 13:35:04 2020 -0500
sci-biology/BRAKER: EAPI bump 7
Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian <chr@chymera.eu>
commit c7a40f0c2955843da5c85d0abbeed58351547ce1
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Thu Jul 18 19:12:10 2019 +0200
sci-biology/BRAKER: version bump
New HOMEPAGE, SRC_URI, layout of .tar.gz tarball
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
commit 3724acdd4d192ac400d81a94f91e957c0e832ccd
Author: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
Date: Sat Mar 31 02:15:01 2018 +0200
sci-biology/BRAKER: version bump, update LICENSE
Package-Manager: Portage-2.3.24, Repoman-2.3.6
commit e506aabb717f6536e683c88a998e7b566aab8164
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Jan 8 15:11:10 2018 +0100
sci-biology/BRAKER: version bump
Package-Manager: Portage-2.3.19, Repoman-2.3.6
commit bce61aa3e4fe85fe411df858eb30ebe72a3a8f88
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Nov 18 20:39:44 2017 +0000
Consistently ident with tabs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit f69e73182fc7cdc6c600a72fceb88ae1626db25d
Author: Justin Lecher <jlec@gentoo.org>
Date: Sat Feb 25 16:50:59 2017 +0000
Drop leftover from CVS in HEADER
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit c976d64e8e6458c02d70ec3aeb8a883e86c26e37
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Dec 3 19:51:08 2016 +0100
sci-biology/BRAKER: version bump, point to additional dependency
Package-Manager: portage-2.3.2
commit a87311f012ae7f20a57d4302b78456e15fa2b600
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 12:46:11 2016 +0200
sci-biology/BRAKER: fix PERL5INC
Package-Manager: portage-2.2.28
commit 51cbdef2f5cdf735664fb3869a98c63e31d96078
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 12:40:17 2016 +0200
sci-biology/BRAKER: fix DEPENDency on dev-perl/Scalar-Util-Numeric
Package-Manager: portage-2.2.28
commit c619dfb295649b810b3534ebb55ff5c69ed74482
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Fri Jul 1 12:28:17 2016 +0200
sci-biology/BRAKER: fix S
Package-Manager: portage-2.2.28
commit 0c868df8f4ba2220ce6b98584c94e23870f0e308
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Feb 27 21:45:25 2016 +0100
sci-biology/BRAKER: add einfo referring to GeneMark-ET requirement
Package-Manager: portage-2.2.26
commit 44918a4a9d9844c8d805694864e978e2c5306eec
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Sat Feb 27 21:38:11 2016 +0100
sci-biology/BRAKER: version bump; update to a new LICENSE; update HOMEPAGE and SRC_URI
Package-Manager: portage-2.2.26
commit 057a98c5e6346d6696fcc7b0ec8fefc9e826245f
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:53:09 2016 +0100
metadata.xml: Set type
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit b9d823e1ea1018d1356a0c18a083eab4d5ea6d8d
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Jan 25 09:50:12 2016 +0100
metadata.xml: convert hard -> proj
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 2ef24e800910be3786e23a31a0217ba0f38659f8
Author: Justin Lecher <jlec@gentoo.org>
Date: Thu Jan 7 15:10:39 2016 +0100
Drop ChangeLogs in favour of commit messages
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 6271f0c55cbb6af7fe88ae1ec9d7dbdedd562565
Author: Justin Lecher <jlec@gentoo.org>
Date: Mon Aug 17 08:53:12 2015 +0200
Convert all $Header$ to $Id$ tags as it has be done in gentoo.git
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit a891336052fb27fd9f3f82e33c30f0984f50ea54
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:25:27 2015 +0200
Revert "Gentoo does https by default now"
This reverts commit 98718494343af4990facdefb0033471686e975a6.
commit 98718494343af4990facdefb0033471686e975a6
Author: Justin Lecher <jlec@gentoo.org>
Date: Sun Jun 21 12:14:25 2015 +0200
Gentoo does https by default now
Signed-off-by: Justin Lecher <jlec@gentoo.org>
commit 03b89a8b4872d92052038aab0a9f64d7bc13c65a
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 20:30:06 2015 +0200
sci-biology/BRAKER: added a note about perl-core/Scalar-List-Utils blocking virtual/perl-Scalar-List-Utils (huh?)
Package-Manager: portage-2.2.18
commit aa013962dcd3a5c45b467c96cda43c4bd8e33fad
Author: Martin Mokrejš <mmokrejs@fold.natur.cuni.cz>
Date: Mon Apr 27 13:38:58 2015 +0200
sci-biology/BRAKER: new package; somehow RDEPENDs are installed wrongly: Can't locate Scalar/Util/Numeric.pm in @INC (you may need to install the Scalar::Util::Numeric module)
Package-Manager: portage-2.2.18