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dev-haskell/samtools

Binding to the C samtools library

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  • samtools-0.2.4.3
    ~amd64
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ChangeLog

commit db98782e890b3cebf75a19b2da3a1bdcbee17fa4
Author: hololeap <hololeap@users.noreply.github.com>
Date: Fri May 12 06:28:08 2023 -0600

*/*: Remove [profile?] from ghc RDEPEND

This reverts commit b2f01bbf1333c88785109bebf75d49a3bd623727.

Adding [profile?] universally causes issues with exe-only packages with
no profile USE flag. This is better handled in the eclass.

Signed-off-by: hololeap <hololeap@users.noreply.github.com>

commit a2f524e74d7e5e5000c1d057a74dcd7f4af7b43c
Author: hololeap <hololeap@users.noreply.github.com>
Date: Sat May 6 17:04:20 2023 -0600

*/*: Remove ~x86 (and related) from KEYWORDS

x86 is mostly untested, and even building a subset of ::haskell
revealed failing tests which pass on amd64.

With the new behavior of hackport to only add ARCH to KEYWORDS, there
will be CI failures if a package has ~x86 removed but not from its
revdep tree as well. The only sensible mitigation is to remove ~x86
tree-wide until we have a dedicated tester willing to fix current bugs.

See: https://github.com/snoyberg/mono-traversable/issues/210
Signed-off-by: hololeap <hololeap@users.noreply.github.com>

commit b2f01bbf1333c88785109bebf75d49a3bd623727
Author: hololeap <hololeap@users.noreply.github.com>
Date: Fri May 5 15:53:40 2023 -0600

*/*: Add [profile?] to ghc RDEPEND

Any package that depends on 'base' will require the 'base' profiling
libs when profiling is enabled. Because virtually every package depends
on 'base', it makes sense to add [profile?] universally to
'dev-lang/ghc' in RDEPEND.

Reported-by: Filip Kszczot <filip@kszczot.pl>
Signed-off-by: hololeap <hololeap@users.noreply.github.com>

commit 9672ee12c9c489f9e5bfdee329a4e6aed692fe4d
Author: Sam James <sam@gentoo.org>
Date: Sat Jul 30 06:55:18 2022 +0100

*/*: fix https->https in metadatd dtd

Newer hackport fixes this (in git, not tagged yet).

Signed-off-by: Sam James <sam@gentoo.org>

commit 110624805aa4d80f7d8efa9477ad662c9a4d043a
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sun Jul 25 12:59:04 2021 +0100

dev-haskell/samtools: update to EAPI=8

Package-Manager: Portage-3.0.20, Repoman-3.0.3
Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>

commit 3d16013c65cc8986c7537d76ed3a2855e978d057
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Sat Nov 23 15:39:53 2019 +0000

*/*: Inline mirror://hackage and update URIs

Follow ::gentoo commit 2a2e66a9407205f18
("*/*: Inline mirror://hackage and update URIs ")

Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>

commit 2a94f64d40e69b69ddfa1b5da7906d17009e5e6f
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Fri Nov 24 09:25:20 2017 +0000

refresh Manifests

Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>

commit 1a6ba469382ab24f8b77b4ff3b043b6e2ed68306
Author: Sergei Trofimovich <slyfox@gentoo.org>
Date: Tue Feb 28 21:38:05 2017 +0000

follow ::gentoo in removing '# $Id$' headers

Done as
$ sed -i */*/*.ebuild -e '/^# \$Id\$$/d'

Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org>

commit df3bf53cb790396c5df4ff0d900f9907ecfecf3b
Author: Sergei Trofimovich <siarheit@google.com>
Date: Mon May 30 15:09:16 2016 +0100

dev-haskell/samtools: bump up to 0.2.4.3

Package-Manager: portage-2.3.0_rc1

commit d981560bf0640e750b6d1571fbe41aa56c810b53
Author: Sergei Trofimovich <siarheit@google.com>
Date: Mon May 9 22:50:38 2016 +0100

dev-haskell/samtools: drop empty line

Package-Manager: portage-2.2.28

commit 2159469bce12f63ee6e341ea1e45e15689e37cd9
Author: Sergei Trofimovich <siarheit@google.com>
Date: Sun May 8 14:53:59 2016 +0100

dev-haskell/samtools: new package, a delend of bamstats

Package-Manager: portage-2.2.28