# Copyright 1999-2024 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=8

inherit R-packages

DESCRIPTION='Adaptation of the Coloc Method for PheWAS'
KEYWORDS="~amd64 ~x64-macos ~arm64-macos"
SRC_URI="http://cran.r-project.org/src/contrib/cophescan_1.4.0.tar.gz"
LICENSE='GPL-3'

IUSE="${IUSE-} r_suggests_ggpubr r_suggests_knitr r_suggests_rcolorbrewer
	r_suggests_rmarkdown r_suggests_testthat"
R_SUGGESTS="
	r_suggests_ggpubr? ( sci-CRAN/ggpubr )
	r_suggests_knitr? ( sci-CRAN/knitr )
	r_suggests_rcolorbrewer? ( sci-CRAN/RColorBrewer )
	r_suggests_rmarkdown? ( sci-CRAN/rmarkdown )
	r_suggests_testthat? ( >=sci-CRAN/testthat-3.0.0 )
"
DEPEND=">=sci-CRAN/Rcpp-1.0.7
	sci-CRAN/ggrepel
	sci-CRAN/coloc
	sci-CRAN/data_table
	sci-CRAN/pheatmap
	virtual/Matrix
	sci-CRAN/dplyr
	>=dev-lang/R-3.5.0
	sci-CRAN/ggplot2
	sci-CRAN/viridis
	sci-CRAN/magrittr
"
RDEPEND="${DEPEND-}
	sci-CRAN/Rcpp
	sci-CRAN/RcppArmadillo
	${R_SUGGESTS-}
"