# Copyright 1999-2021 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=7

inherit R-packages

DESCRIPTION='Multi-Patient Analysis of Genomic Markers'
KEYWORDS="~amd64"
SRC_URI="http://cran.r-project.org/src/contrib/MPAgenomics_1.2.3.tar.gz"
LICENSE='GPL-2+'

IUSE="${IUSE-} r_suggests_aroma_affymetrix r_suggests_aroma_cn
	r_suggests_aroma_core r_suggests_aroma_light r_suggests_cghcall
	r_suggests_matrix r_suggests_r_devices r_suggests_r_filesets
	r_suggests_r_methodss3 r_suggests_r_oo r_suggests_snowfall"
R_SUGGESTS="
	r_suggests_aroma_affymetrix? ( sci-CRAN/aroma_affymetrix )
	r_suggests_aroma_cn? ( sci-CRAN/aroma_cn )
	r_suggests_aroma_core? ( sci-CRAN/aroma_core )
	r_suggests_aroma_light? ( sci-BIOC/aroma_light )
	r_suggests_cghcall? ( sci-BIOC/CGHcall )
	r_suggests_matrix? ( virtual/Matrix )
	r_suggests_r_devices? ( sci-CRAN/R_devices )
	r_suggests_r_filesets? ( sci-CRAN/R_filesets )
	r_suggests_r_methodss3? ( sci-CRAN/R_methodsS3 )
	r_suggests_r_oo? ( sci-CRAN/R_oo )
	r_suggests_snowfall? ( sci-CRAN/snowfall )
"
DEPEND="sci-CRAN/R_utils
	>=sci-CRAN/changepoint-1.1
	sci-CRAN/spikeslab
	>=sci-CRAN/HDPenReg-0.90
	sci-CRAN/glmnet
"
RDEPEND="${DEPEND-} ${R_SUGGESTS-}"