# Copyright 2021-2024 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 PYTHON_COMPAT=( python3_{10..12} ) BOINC_APP_OPTIONAL=1 inherit boinc-app flag-o-matic meson optfeature python-any-r1 DESCRIPTION="Program for docking ligands to proteins and nucleic acids" HOMEPAGE="https://gitlab.com/Jukic/cmdock" SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2" S="${WORKDIR}/${PN}-v${PV}" LICENSE="LGPL-3 ZLIB" SLOT="0/${PV}" KEYWORDS="~amd64" IUSE="apidoc cpu_flags_x86_sse2 doc test" # Flaky tests RESTRICT="test" DEPEND=" dev-cpp/eigen:3 >=dev-cpp/indicators-2.3-r1 >=dev-cpp/pcg-cpp-0.98.1_p20210406-r1 >=dev-libs/cxxopts-3 " BDEPEND=" apidoc? ( app-text/doxygen dev-texlive/texlive-fontutils ) doc? ( $(python_gen_any_dep ' dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}] dev-python/sphinx[${PYTHON_USEDEP}] ') ) test? ( ${PYTHON_DEPS} ) " PATCHES=( "${FILESDIR}"/${P}-include.patch "${FILESDIR}"/${P}-cxxopts.patch ) DOCS=( README.md changelog.md ) BOINC_MASTER_URL="https://www.sidock.si/sidock/" BOINC_INVITATION_CODE="Crunch_4Science" BOINC_APP_HELPTEXT=\ "The easiest way to do something useful with this application is to attach it to SiDock@home BOINC project." INSTALL_PREFIX="${EPREFIX}/opt/${P}" boinc-app_add_deps python_check_deps() { use doc || return 0 python_has_version "dev-python/sphinx[${PYTHON_USEDEP}]" && python_has_version "dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]" } foreach_wrapper_job() { sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die } src_prepare() { default python_fix_shebang "${S}"/bin } src_configure() { # very weird directory layout local emesonargs=( --prefix="${INSTALL_PREFIX:?}" $(meson_use apidoc) $(meson_use doc) $(meson_use test tests) -Ddocdir="${EPREFIX}"/usr/share/doc/${PF} ) meson_src_configure use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE" } src_install() { meson_src_install python_optimize "${D}${INSTALL_PREFIX:?}"/bin if use boinc; then boinc_install_appinfo "${FILESDIR}"/app_info_0.2.0-r1.xml boinc_install_wrapper cmdock-l_wrapper \ "${FILESDIR}"/cmdock-l_job_0.2.0-r1.xml cmdock-l_job.xml # install cmdock executable exeinto "$(get_project_root)" exeopts --owner root --group boinc doexe "${D}${INSTALL_PREFIX:?}"/bin/cmdock # install a blank file insinto "$(get_project_root)" insopts -m 0644 --owner root --group boinc newins - docking_out fi } pkg_postinst() { optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]" use boinc && boinc-app_pkg_postinst } pkg_postrm() { use boinc && boinc-app_pkg_postrm }